Species (919)
- Myotis ricketti (Thomas, 1894)
- Myotis riparius Handley, 1960
- Myotis simus Thomas, 1901
- Myotis sicarius Thomas, 1915
- Myotis sodalis Miller & Allen, 1928
- Myotis thysanodes Miller, 1897
- Myotis tricolor (Temminck, 1832)
- Myotis vivesi Menegaux, 1901
- Nyctalus aviator (Thomas, 1911)
- Myotis yumanensis (H. Allen, 1864)
- Nyctalus montanus (Barrett-Hamilton, 1906)
- Nycticeius balstoni (Thomas, 1906)
- Nycticeius greyii (Gray, 1842)
- Nyctophilus microtis Thomas, 1888
- Pharotis imogene Thomas, 1914
- Phoniscus papuensis (Dobson, 1878)
- Pipistrellus cadornae Thomas, 1916
- Pipistrellus ceylonicus (Kelaart, 1852)
- Pipistrellus crassulus Thomas, 1904
- Pipistrellus coromandra (Gray, 1838)
- Pipistrellus deserti Thomas, 1902
- Pipistrellus dormeri (Dobson, 1875)
- Pipistrellus eisentrauti Hill, 1968
- Pipistrellus macrotis (Temminck, 1840)
- Pipistrellus maderensis (Dobson, 1878)
- Pipistrellus mordax (Peters, 1866)
- Pipistrellus minahassae (Meyer, 1899)
- Pipistrellus musiculus Thomas, 1913
- Pipistrellus permixtus Aellen, 1957
- Pipistrellus petersi (Meyer, 1899)
- Pipistrellus pulveratus (Peters, 1871)
- Pipistrellus savii (Bonaparte, 1837)
- Pipistrellus societatis Hill, 1972
- Pipistrellus tenuis (Temminck, 1840)
- Rhogeessa alleni Thomas, 1892
- Rhogeessa gracilis Miller, 1897
- Scotophilus dinganii (A. Smith, 1833)
- Scotophilus celebensis Sody, 1928
- Scotophilus nigritellus De Winton, 1899
- Scotophilus viridis (Peters, 1852)
- Tomopeas ravus Miller, 1900
- Vespertilio superans Thomas, 1899
- Tylonycteris robustula Thomas, 1915
- Mystacina tuberculata Gray, 1843
- Chaerephon ansorgei (Thomas, 1913)
- Aethalops alecto (Thomas, 1923)
- Acerodon jubatus (Eschscholtz, 1831)
- Balionycteris maculata (Thomas, 1893)
- Chironax melanocephalus (Temminck, 1825)
- Dobsonia beauforti Bergmans, 1975
- Dobsonia minor (Dobson, 1879)
- Dobsonia peroni (E. Geoffroy, 1810)
- Dobsonia viridis (Heude, 1896)
- Eonycteris major K. Andersen, 1910
- Epomophorus angolensis Gray, 1870
- Epomophorus wahlbergi (Sundevall, 1846)
- Epomophorus labiatus (Temminck, 1837)
- Harpyionycteris celebensis Miller & Hollister, 1921
- Epomops franqueti (Tomes, 1860)
- Macroglossus fructivorus Taylor, 1934
- Megaerops ecaudatus (Temminck, 1837)
- Melonycteris aurantius Phillips, 1966
- Myonycteris brachycephala (Bocage, 1889)
- Nyctimene aello (Thomas, 1900)
- Nyctimene robinsoni Thomas, 1904
- Nanonycteris veldkampi (Jentink, 1888)
- Nyctimene major (Dobson, 1877)
- Paranyctimene raptor Tate, 1942
- Ptenochirus minor Yoshiyuki, 1979
- Pteropus arquatus Miller & Hollister, 1921
- Pteropus chrysoproctus Temminck, 1837
- Pteropus faunulus Miller, 1902
- Pteralopex atrata Thomas, 1888
- Pteropus gilliardi Van Deusen, 1969
- Pteropus lylei K. Andersen, 1908
- Pteropus insularis Hombron & Jacquinot, 1842
- Pteropus melanopogon Peters, 1867
- Pteropus mahaganus Sanborn, 1931
- Pteropus neohibernicus Peters, 1876
- Pteropus pumilus Miller, 1911
- Pteropus phaeocephalus Thomas, 1882
- Pteropus ocularis Peters, 1867
- Pteropus rufus E. Geoffroy, 1803
- Pteropus sanctacrucis Troughton, 1930
- Pteropus subniger (Kerr, 1792)
- Pteropus vampyrus (Linnaeus, 1758)
- Pteropus tokudae Tate, 1934
- Rousettus amplexicaudatus (E. Geoffroy, 1810)
- Rousettus spinalatus Bergmans & Hill, 1980
- Rousettus lanosus Thomas, 1906
- Pteropus voeltzkowi Matschie, 1909
- Balantiopteryx plicata Peters, 1867
- Sphaerias blanfordi (Thomas, 1891)
- Thoopterus nigrescens (Gray, 1870)
- Coleura seychellensis Peters, 1869
- Rhinopoma muscatellum Thomas, 1903
- Diclidurus albus Wied, 1820
- Diclidurus scutatus Peters, 1869
- Emballonura beccarii Peters & Doria, 1881
- Emballonura raffrayana Dobson, 1879